6Z6U Metal Binding Protein date May 29, 2020
title 1.25 A Structure Of Human Apoferritin Obtained From Titan Mo Microscope
authors K.M.Yip, N.Fischer, E.Paknia, A.Chari, H.Stark
compound source
Molecule: Ferritin Heavy Chain
Chain: A, K, a, B, E, e, 1, r, G, I, M, O, Q, S, U, W, Y, 2 P, X, 6;
Synonym: Ferritin H Subunit,Cell Proliferation-Inducing Gen Protein;
Ec: 1.16.3.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fth1, Fth, Fthl6, Oksw-Cl.84, Pig15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 1.25 Å
ligand CSX, MG, NA enzyme Oxidoreductase E.C.1.16.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, r, a, K, Y, E, 2, Q, 1, M, e, 6, A, O, W, X, P, B, H, 4, I, G, U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2243 Kb) [Save to disk]
  • Biological Unit Coordinates (6z6u.pdb1.gz) 2177 Kb
  • LPC: Ligand-Protein Contacts for 6Z6U
  • CSU: Contacts of Structural Units for 6Z6U
  • Retrieve 6Z6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Z6U from S2C, [Save to disk]
  • View 6Z6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Z6U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6z6u_K] [6z6u_1] [6z6u_Y] [6z6u_2] [6z6u_F] [6z6u_r] [6z6u_G] [6z6u_a] [6z6u_M] [6z6u_B] [6z6u_W] [6z6u_I] [6z6u_S] [6z6u_e] [6z6u_E] [6z6u_X] [6z6u_H] [6z6u_U] [6z6u_O] [6z6u_Q] [6z6u_A] [6z6u_4] [6z6u_P] [6z6u_6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Z6U
  • Community annotation for 6Z6U at PDBWiki (http://pdbwiki.org)

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