6ZCT Viral Protein date Jun 12, 2020
title Nonstructural Protein 10 (Nsp10) From Sars Cov-2
authors A.Rogstam, M.Nyblom, S.Christensen, C.Sele, T.Lindvall, A.A.Rasmu I.Andre, S.Z.Fisher, W.Knecht, F.Kozielski
compound source
Molecule: Nsp10
Chain: A
Synonym: Nsp10
Ec: 3.4.19.12,3.4.22.-,3.4.22.69
Engineered: Yes
Mutation: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: I 21 3
R_factor 0.190 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.736 106.736 106.736 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand ZN enzyme Hydrolase E.C.3.4.19.12 BRENDA
Primary referenceCrystal Structure of Non-Structural Protein 10 from Severe Acute Respiratory Syndrome Coronavirus-2., Rogstam A, Nyblom M, Christensen S, Sele C, Talibov VO, Lindvall T, Rasmussen AA, Andre I, Fisher Z, Knecht W, Kozielski F, Int J Mol Sci. 2020 Oct 6;21(19). pii: ijms21197375. doi: 10.3390/ijms21197375. PMID:33036230
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (6zct.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 6ZCT
  • CSU: Contacts of Structural Units for 6ZCT
  • Structure Factors (142 Kb)
  • Retrieve 6ZCT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ZCT from S2C, [Save to disk]
  • View 6ZCT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ZCT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6zct_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ZCT
  • Community annotation for 6ZCT at PDBWiki (http://pdbwiki.org)

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