6ZSI Endocytosis date Jul 15, 2020
title The Mechanism Of Activation Of The Actin Binding Protein Ehb Family Members.
authors A.Rai, N.Bleimling, I.R.Vetter, R.S.Goody
compound source
Molecule: Ras-Related Protein Rab-8a
Chain: A, B
Synonym: Oncogene C-Mel
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab8a, Mel, Rab8
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Eh Domain-Binding Protein 1
Chain: C, D
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ehbp1, Kiaa0903, Nacsin
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.223 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.360 35.380 165.670 90.00 93.76 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand GNP, MG, PEG enzyme
Primary referenceThe mechanism of activation of the actin binding protein EHBP1 by Rab8 family members., Rai A, Bleimling N, Vetter IR, Goody RS, Nat Commun. 2020 Aug 21;11(1):4187. doi: 10.1038/s41467-020-17792-3. PMID:32826901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (6zsi.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (6zsi.pdb2.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 6ZSI
  • CSU: Contacts of Structural Units for 6ZSI
  • Structure Factors (440 Kb)
  • Retrieve 6ZSI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ZSI from S2C, [Save to disk]
  • View 6ZSI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ZSI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6zsi_B] [6zsi_A] [6zsi_D] [6zsi_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ZSI
  • Community annotation for 6ZSI at PDBWiki (http://pdbwiki.org)

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