6ZYM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GTP, IHP, MG, ZN enzyme
Primary referenceStructural Insights into the Roles of Metazoan-Specific Splicing Factors in the Human Step 1 Spliceosome., Bertram K, El Ayoubi L, Dybkov O, Agafonov DE, Will CL, Hartmuth K, Urlaub H, Kastner B, Stark H, Luhrmann R, Mol Cell. 2020 Oct 1;80(1):127-139.e6. doi: 10.1016/j.molcel.2020.09.012. PMID:33007253
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (911 Kb) [Save to disk]
  • Biological Unit Coordinates (6zym.pdb1.gz) 866 Kb
  • LPC: Ligand-Protein Contacts for 6ZYM
  • CSU: Contacts of Structural Units for 6ZYM
  • Retrieve 6ZYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ZYM from S2C, [Save to disk]
    • View 6ZYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6zym_Y] [6zym_2] [6zym_5] [6zym_6] [6zym_9] [6zym_A] [6zym_B] [6zym_C] [6zym_D] [6zym_E] [6zym_F] [6zym_L] [6zym_O] [6zym_P] [6zym_Q] [6zym_R] [6zym_S] [6zym_T] [6zym_V] [6zym_Z] [6zym_p] [6zym_r] [6zym_s] [6zym_t] [6zym_u] [6zym_x]
  • SWISS-PROT database:

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