7A91 Viral Protein date Sep 01, 2020
title Dissociated S1 Domain Of Sars-Cov-2 Spike Bound To Ace2 (Non Refinement)
authors D.J.Benton, A.G.Wrobel, P.B.Rosenthal, S.J.Gamblin
compound source
Molecule: Angiotensin-Converting Enzyme 2
Chain: D
Synonym: Angiotensin-Converting Enzyme Homolog,Aceh,Angiote Converting Enzyme-Related Carboxypeptidase,Ace-Related Carboxypeptidase,Metalloprotease Mprot15;
Ec: 3.4.17.23,3.4.17.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ace2, Unq868pro1885
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Spike Glycoprotein
Chain: A
Synonym: S Glycoprotein,E2,Peplomer Protein
Engineered: Yes

Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: S, 2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand NAG, ZN enzyme Hydrolase E.C.3.4.17.23 BRENDA
Primary referenceReceptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion., Benton DJ, Wrobel AG, Xu P, Roustan C, Martin SR, Rosenthal PB, Skehel JJ, Gamblin SJ, Nature. 2020 Sep 17. pii: 10.1038/s41586-020-2772-0. doi:, 10.1038/s41586-020-2772-0. PMID:32942285
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (7a91.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 7A91
  • CSU: Contacts of Structural Units for 7A91
  • Retrieve 7A91 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7A91 from S2C, [Save to disk]
  • View 7A91 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7A91
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7a91 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7a91_D] [7a91_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7A91
  • Community annotation for 7A91 at PDBWiki (http://pdbwiki.org)

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