7B0Y Splicing date Nov 23, 2020
title Structure Of A Transcribing Rna Polymerase II-U1 Snrnp Compl
authors S.Zhang, S.Aibara, S.M.Vos, D.E.Agafonov, R.Luehrmann, P.Cramer
compound source
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb1
Chain: A
Synonym: Rna Polymerase II Subunit B1,Dna-Directed Rna Poly Subunit A,Dna-Directed Rna Polymerase III Largest Subunit;
Ec: 2.7.7.6
 Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: B
Ec: 2.7.7.6
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb3
Chain: C
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerase II Subunit D
Chain: D
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerase II Subunit E
Chain: E
Synonym: Rpb5 Homolog
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerase II Subunit F
Chain: F
Synonym: Dna-Directed Rna Polymerases I,II,And III Subunit Rpb6 Homolog;
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb7
Chain: G
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: H
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb9
Chain: I
Synonym: Rna Polymerase II Subunit B9,Dna-Directed Rna Poly Subunit I,Rna Polymerase II 14.5 Kda Subunit,Rpb14.5;
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: J
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb11-A
Chain: K
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Rpb12
Chain: L
Organism_scientific: Sus Scrofa Domesticus
Organism_taxid: 9825

Molecule: Non-Template Dna
Chain: N
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 145-Nt Rna
Chain: P
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Template Dna
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: U1 Snrna
Chain: a
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: U1 Small Nuclear Ribonucleoprotein 70 Kda
Chain: b
Synonym: Snrnp70
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: U1 Small Nuclear Ribonucleoprotein A
Chain: c
Synonym: U1a
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Small Nuclear Ribonucleoprotein Sm D2
Chain: e
Synonym: Sm-D2,Snrnp Core Protein D2
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Small Nuclear Ribonucleoprotein F
Chain: f
Synonym: Snrnp-F,Sm Protein F,Smf
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Small Nuclear Ribonucleoprotein E
Chain: g
Synonym: Snrnp-E,Sm Protein E,Sme
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Small Nuclear Ribonucleoprotein G
Chain: h
Synonym: Snrnp-G,Sm Protein G,Smg
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Small Nuclear Ribonucleoprotein Sm D3
Chain: I
Synonym: Sm-D3,Snrnp Core Protein D3
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Small Nuclear Ribonucleoprotein-Associated Protei
Chain: j
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Small Nuclear Ribonucleoprotein Sm D1
Chain: k
Synonym: Sm-D1,Sm-D Autoantigen,Snrnp Core Protein D1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (802 Kb) [Save to disk]
  • Biological Unit Coordinates (7b0y.pdb1.gz) 776 Kb
  • LPC: Ligand-Protein Contacts for 7B0Y
  • CSU: Contacts of Structural Units for 7B0Y
  • Retrieve 7B0Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7B0Y from S2C, [Save to disk]
    • View 7B0Y in 3D
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    • Visual 3D analysis of 7B0Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7b0y_I] [7b0y_e] [7b0y_i] [7b0y_J] [7b0y_j] [7b0y_c] [7b0y_A] [7b0y_B] [7b0y_k] [7b0y_G] [7b0y_b] [7b0y_T] [7b0y_F] [7b0y_K] [7b0y_L] [7b0y_E] [7b0y_g] [7b0y_a] [7b0y_H] [7b0y_N] [7b0y_D] [7b0y_P] [7b0y_C] [7b0y_h] [7b0y_f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7B0Y
  • Community annotation for 7B0Y at PDBWiki (http://pdbwiki.org)

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