7BEQ Protein Binding date Dec 24, 2020
title Microed Structure Of The Myd88 Tir Domain Higher-Order Assem
authors M.T.B.Clabbers, S.Holmes, T.W.Muusse, P.Vajjhala, S.J.Thygesen, A D.J.B.Hunter, T.I.Croll, J.D.Nanson, M.H.Rahaman, A.Aquila, M.S. M.Liang, C.H.Yoon, J.Zhao, N.A.Zatsepin, B.Abbey, E.Sierecki, Y.G C.Darmanin, B.Kobe, H.Xu, T.Ve
compound source
Molecule: Myeloid Differentiation Primary Response Protein
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myd88
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 1 2 1
R_factor 0.223 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.060 31.010 54.300 90.00 107.70 90.00
method Electron Crystallographyresolution 3.00 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (7beq.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 7BEQ
  • Structure Factors (103 Kb)
  • Retrieve 7BEQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7BEQ from S2C, [Save to disk]
    • View 7BEQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7BEQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7beq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7BEQ
  • Community annotation for 7BEQ at PDBWiki (http://pdbwiki.org)

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