7C7A Rna Binding Protein date May 24, 2020
title Cryo-Em Structure Of Yeast Ribonuclease Mrp With Substrate I
authors P.Lan, J.Wu, M.Lei
compound source
Molecule: Ribonuclease Mrp Rna Subunit Nme1
Chain: A
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Ribonucleases Pmrp Protein Subunit Pop1
Chain: B
Synonym: Rna-Processing Protein Pop1,Rnases Pmrp 100.4 Kda
Ec: 3.1.26.5
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Ribonucleases Pmrp Protein Subunit Pop3
Chain: C
Synonym: Rna-Processing Protein Pop3,Rnases Mrpp 22.6 Kda
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Rnases Mrpp 32.9 Kda Subunit
Chain: D
Synonym: Rna-Processing Protein Pop4
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Ribonuclease Pmrp Protein Subunit Pop5
Chain: E
Synonym: Rna-Processing Protein Pop5,Rnase Pmrp 19.6 Kda S
Ec: 3.1.26.5
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Ribonucleases Pmrp Protein Subunit Pop6
Chain: F
Synonym: Rna-Processing Protein Pop6,Rnases Pmrp 18.2 Kda
Ec: 3.1.26.5
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Ribonucleases Pmrp Protein Subunit Pop7
Chain: G
Synonym: Rna-Processing Protein Pop7,Rnases Pmrp 15.8 Kda
Ec: 3.1.26.5
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Ribonucleases Pmrp Protein Subunit Pop8
Chain: H
Synonym: Rna-Processing Protein Pop8,Rnases Pmrp 15.5 Kda
Ec: 3.1.26.5
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Ribonuclease Pmrp Protein Subunit Rpp1
Chain: I, J
Synonym: Rna-Processing Protein Rpp1,Rnasepmrp 32.2 Kda Su
Ec: 3.1.26.5
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Ribonuclease Mrp Protein Subunit Snm1
Chain: K
Synonym: Rna-Processing Protein Snm1,Rnase Mrp 22.5 Kda Sub
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Other_details: Cell

Molecule: Ribonuclease Mrp Protein Subunit Rmp1
Chain: L
Synonym: Rna-Processing Protein Rmp1,Rnase Mrp 23.6 Kda Sub
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Internal Transcribed Spacer 1
Chain: R
Engineered: Yes
Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.80 Å
ligand MG, ZN enzyme Hydrolase E.C.3.1.26.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


C
  • ribonuclease MRP activity
  • ribonuclease P activity


    • D
  • ribonuclease MRP activity
  • ribonuclease P activity
  • ribonuclease activity


    • E
  • ribonuclease MRP activity
  • ribonuclease P activity
  • ribonuclease activity


    • F
  • ribonuclease MRP activity
  • ribonuclease P activity


    • G
  • ribonuclease MRP activity
  • ribonuclease P activity


    • H
  • ribonuclease P activity


    • J, I


    K
  • nuclease activity
  • ribonuclease P activity


    • L


    Primary referenceStructural insight into precursor ribosomal RNA processing by ribonuclease MRP., Lan P, Zhou B, Tan M, Li S, Cao M, Wu J, Lei M, Science. 2020 Jun 25. pii: science.abc0149. doi: 10.1126/science.abc0149. PMID:32586950
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (498 Kb) [Save to disk]
  • Biological Unit Coordinates (7c7a.pdb1.gz) 490 Kb
  • LPC: Ligand-Protein Contacts for 7C7A
  • CSU: Contacts of Structural Units for 7C7A
  • Retrieve 7C7A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7C7A from S2C, [Save to disk]
    • View 7C7A in 3D
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    • Visual 3D analysis of 7C7A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7c7a_L] [7c7a_C] [7c7a_H] [7c7a_E] [7c7a_K] [7c7a_B] [7c7a_R] [7c7a_D] [7c7a_A] [7c7a_J] [7c7a_I] [7c7a_G] [7c7a_F]
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  • Domain organization of by SWISSPFAM
    • Other resources with information on 7C7A
  • Community annotation for 7C7A at PDBWiki (http://pdbwiki.org)

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