7COH Oxidoreductase date Aug 04, 2020
title Dimeric Form Of Bovine Heart Cytochrome C Oxidase In The Ful Oxidized State
authors K.Shinzawa-Itoh, K.Muramoto
compound source
Molecule: Cytochrome C Oxidase Subunit 1
Chain: A, N
Synonym: Cytochrome C Oxidase Polypeptide I
Ec: 7.1.1.9
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Mt-Co1, Coi, Coxi, Mtco1
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 2
Chain: B, O
Synonym: Cytochrome C Oxidase Polypeptide II
Ec: 7.1.1.9
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 3
Chain: C, P
Synonym: Cytochrome C Oxidase Polypeptide III
Ec: 7.1.1.9
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Mt-Co3, Coiii, Coxiii, Mtco3
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 4 Isoform 1
Chain: D, Q
Synonym: Cytochrome C Oxidase Polypeptide Iv
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cox4i1, Cox4
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 5a
Chain: E, R
Synonym: Cytochrome C Oxidase Polypeptide Va
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cox5a
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 5b
Chain: F, S
Synonym: Cytochrome C Oxidase Polypeptide Via
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 6a2, Mitochondrial
Chain: G, T
Synonym: Cytochrome C Oxidase Polypeptide Via-Heart,Coxviah Cytochrome C Oxidase Polypeptide Vib;
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cox6a2, Cox6a
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 6b1
Chain: H, U
Synonym: Cytochrome C Oxidase Polypeptide Vii
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cox6b1, Cox6b
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 6c
Chain: I, V
Synonym: Cytochrome C Oxidase Polypeptide Vic,Cytochrome C Subunit Sta;
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cox6c
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 7a1
Chain: J, W
Synonym: Cytochrome C Oxidase Subunit Viiic,Viiic
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cox7a1, Cox7a, Cox7ah
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 7b
Chain: K, X
Synonym: Cytochrome C Oxidase Polypeptide Viib
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cox7b
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 7c, Mitochondrial
Chain: L, Y
Synonym: Cytochrome C Oxidase Polypeptide Viiia
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cox7c, Cox7cp1
Expression_system: Bos Taurus
Expression_system_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 8b
Chain: M, Z
Synonym: Cytochrome C Oxidase Polypeptide Viii-Heart
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Cox8b, Cox8h
Expression_system: Bos Taurus
Expression_system_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.149 R_Free 0.170
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.998 204.193 177.759 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CDL, CHD, CU, CUA, DMU, EDO, FME, HEA, LFA, MG, NA, PEK, PER, PGV, UNX, ZN enzyme E.C.7.1.1.9 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1367 Kb) [Save to disk]
  • Biological Unit Coordinates (7coh.pdb1.gz) 676 Kb
  • Biological Unit Coordinates (7coh.pdb2.gz) 672 Kb
  • LPC: Ligand-Protein Contacts for 7COH
  • CSU: Contacts of Structural Units for 7COH
  • Structure Factors (25851 Kb)
  • Retrieve 7COH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7COH from S2C, [Save to disk]
    • View 7COH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7COH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7coh_Q] [7coh_T] [7coh_S] [7coh_C] [7coh_M] [7coh_G] [7coh_Z] [7coh_B] [7coh_L] [7coh_W] [7coh_D] [7coh_J] [7coh_H] [7coh_R] [7coh_E] [7coh_I] [7coh_X] [7coh_V] [7coh_Y] [7coh_U] [7coh_K] [7coh_O] [7coh_P] [7coh_N] [7coh_A] [7coh_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7COH
  • Community annotation for 7COH at PDBWiki (http://pdbwiki.org)

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