7D8S Transcription date Oct 09, 2020
title Mitf Bhlhlz Apo Structure
authors M.Guo, P.Fang, J.Wang
compound source
Molecule: Microphthalmia-Associated Transcription Factor,Me Trna Synthetase Beta Subunit;
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
Other_details: Fusion Protein Of Microphthalmia-Associated Transcription Factor And Methionyl-Trna Synthetase Beta Sub
 Organism_scientific: Homo Sapiens, Aquifex Aeolicus Vf5
Organism_common: Human
Organism_taxid: 9606, 224324
Strain: Vf5
Gene: Mitf, Bhlhe32, Metg', Aq_422
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.231 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.005 62.306 65.307 90.12 72.74 86.39
method X-Ray Diffractionresolution 2.28 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (7d8s.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (7d8s.pdb2.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 7D8S
  • CSU: Contacts of Structural Units for 7D8S
  • Structure Factors (345 Kb)
  • Retrieve 7D8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7D8S from S2C, [Save to disk]
    • View 7D8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7D8S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7d8s_C] [7d8s_A] [7d8s_D] [7d8s_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7D8S
  • Community annotation for 7D8S at PDBWiki (http://pdbwiki.org)

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