7DTY Structural Protein date Jan 06, 2021
title Structural Basis Of Ligand Selectivity Conferred By The Huma Dependent Insulinotropic Polypeptide Receptor
authors F.H.Zhao, C.Zhang, Q.T.Zhou, K.N.Hang, X.Y.Zou, Y.Chen, F.Wu, Q.D.R A.T.Dai, W.C.Yin, D.D.Shen, Y.Zhang, T.Xia, R.C.Stevens, H.E.Xu, D L.H.Zhao, M.W.Wang
compound source
Molecule: Human Glucose-Dependent Insulinotropic Polypeptid Receptor;
Chain: R
Engineered: Yes
Other_details: Mutations:1
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Gastric Inhibitory Polypeptide
Chain: P
Synonym: Gip,Glucose-Dependent Insulinotropic Polypeptide,I Hormone;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Guanine Nucleotide-Binding Protein G(S) Subunit A Isoforms Short;
Chain: A
Synonym: Adenylate Cyclase-Stimulating G Alpha Protein
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Gnas, Gnas1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1;
Chain: B
Synonym: Transducin Beta Chain 1
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Gnb1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2;
Chain: G
Synonym: G Gamma-I
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Gng2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Nanobody-35
Chain: N
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.98 Å
ligand CLR enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (7dty.pdb1.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 7DTY
  • CSU: Contacts of Structural Units for 7DTY
  • Retrieve 7DTY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7DTY from S2C, [Save to disk]
  • View 7DTY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7DTY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7dty_P] [7dty_N] [7dty_A] [7dty_R] [7dty_B] [7dty_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7DTY
  • Community annotation for 7DTY at PDBWiki (http://pdbwiki.org)

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