7EYK Hydrolase date May 31, 2021
title Crystal Structure Of Escherichia Coli Ppnp-Selenomethionine
authors Y.Wen, B.X.Wu
compound source
Molecule: Pyrimidinepurine Nucleoside Phosphorylase
Chain: A
Synonym: Adenosine Phosphorylase,Cytidine Phosphorylase,Gua Phosphorylase,Inosine Phosphorylase,Thymidine Phosphorylase Phosphorylase,Xanthosine Phosphorylase;
Engineered: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Strain: K-12
Gene: Ppnp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 62
R_factor 0.151 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.658 59.658 52.652 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.38 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (7eyk.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 7EYK
  • CSU: Contacts of Structural Units for 7EYK
  • Structure Factors (530 Kb)
  • Retrieve 7EYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7EYK from S2C, [Save to disk]
  • View 7EYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7EYK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7eyk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7EYK
  • Community annotation for 7EYK at PDBWiki (http://pdbwiki.org)

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