7HVP Hydrolase Hydrolase Inhibitor date Sep 13, 1990
title X-Ray Crystallographic Structure Of A Complex Between A Synt Protease Of Human Immunodeficiency Virus 1 And A Substrate- Hydroxyethylamine Inhibitor
authors A.L.Swain, M.M.Miller, J.Green, D.H.Rich, J.Schneider, S.B.H.Kent A.Wlodawer
compound source
Molecule: Hiv-1 Protease
Chain: A, B
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Inhibitor Ace-Ser-Leu-Asn-Phe-Psi(Ch(Oh)-Ch2n)-Pr (Jg-365);
Chain: C
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.200 58.800 62.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ABA, ACE, JG3, VME enzyme
note 7HVP (Molecule of the Month:pdb6)
related structures by homologous chain: 1HPS, 1VIJ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceX-ray crystallographic structure of a complex between a synthetic protease of human immunodeficiency virus 1 and a substrate-based hydroxyethylamine inhibitor., Swain AL, Miller MM, Green J, Rich DH, Schneider J, Kent SB, Wlodawer A, Proc Natl Acad Sci U S A. 1990 Nov;87(22):8805-9. PMID:2247451
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (7hvp.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 7HVP
  • CSU: Contacts of Structural Units for 7HVP
  • Likely Quarternary Molecular Structure file(s) for 7HVP
  • Retrieve 7HVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7HVP from S2C, [Save to disk]
    • View 7HVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7HVP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 7HVP, from MSDmotif at EBI
  • Genome occurence of 7HVP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d7hvpa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d7hvpb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7hvp_A] [7hvp] [7hvp_C] [7hvp_B]
  • SWISS-PROT database: [P03369]
  • Domain organization of [POL_HV1A2] by SWISSPFAM
    • Other resources with information on 7HVP
  • Community annotation for 7HVP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 7HVP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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