7JRM Sugar Binding Protein date Aug 12, 2020
title The Structure Of Cbm51-2 And Int Domains From Clostridium Pe Zmpb
authors B.Pluvinage, A.B.Boraston
compound source
Molecule: F58 Type C Domain Protein
Chain: A
Fragment: Carbohydrate Binding Module (Unp Residues 1227-16
Engineered: Yes
 Organism_scientific: Clostridium Perfringens (Strain Atcc 1 Dsm 756 Jcm 1290 Ncimb 6125 Nctc 8237 Type A);
Organism_taxid: 195103
Strain: Atcc 13124 Dsm 756 Jcm 1290 Ncimb 6125 Nctc Type A;
Gene: Cpf_1489
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.248 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.050 49.160 78.500 90.00 112.05 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (7jrm.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 7JRM
  • CSU: Contacts of Structural Units for 7JRM
  • Structure Factors (790 Kb)
  • Retrieve 7JRM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JRM from S2C, [Save to disk]
    • View 7JRM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7JRM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jrm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7JRM
  • Community annotation for 7JRM at PDBWiki (http://pdbwiki.org)

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