7JTH Transferase, Lyase date Aug 17, 2020
title Cryo-Em Structure Of Unliganded Octameric Prenyltransferase Phomopsis Amygdali Fusicoccadiene Synthase
authors J.L.Faylo, T.Van Eeuwen, K.Murakami, D.W.Christianson
compound source
Molecule: Fusicoccadiene Synthase
Chain: A, B, C, D, E, F, G, H
Synonym: Fs,Fusicoccin A Biosynthetic Gene Clusters Protein
Padc4: Ggs
Ec: 4.2.3.43,2.5.1.29
Engineered: Yes
 Organism_scientific: Phomopsis Amygdali
Organism_taxid: 1214568
Gene: Pafs, Orf1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus (De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a(+)
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand
enzyme Lyase E.C.4.2.3.43 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (294 Kb) [Save to disk]
  • Biological Unit Coordinates (7jth.pdb1.gz) 264 Kb
  • CSU: Contacts of Structural Units for 7JTH
  • Retrieve 7JTH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JTH from S2C, [Save to disk]
    • View 7JTH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7JTH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jth_H] [7jth_B] [7jth_A] [7jth_C] [7jth_E] [7jth_F] [7jth_G] [7jth_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7JTH
  • Community annotation for 7JTH at PDBWiki (http://pdbwiki.org)

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