7JTL Viral Protein date Aug 18, 2020
title Structure Of Sars-Cov-2 Orf8 Accessory Protein
authors T.G.Flower, C.Z.Buffalo, R.M.Hooy, M.Allaire, X.Ren, J.H.Hurley
compound source
Molecule: Orf8 Protein
Chain: A, B
Synonym: Orf8, Non-Structural Protein 8, Ns8
Engineered: Yes
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.217 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.258 44.258 264.111 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand NA enzyme
Primary referenceStructure of SARS-CoV-2 ORF8, a rapidly evolving coronavirus protein implicated in immune evasion., Flower TG, Buffalo CZ, Hooy RM, Allaire M, Ren X, Hurley JH, bioRxiv. 2020 Aug 27. doi: 10.1101/2020.08.27.270637. PMID:32869027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (7jtl.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 7JTL
  • CSU: Contacts of Structural Units for 7JTL
  • Structure Factors (339 Kb)
  • Retrieve 7JTL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JTL from S2C, [Save to disk]
    • View 7JTL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7JTL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jtl_A] [7jtl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7JTL
  • Community annotation for 7JTL at PDBWiki (http://pdbwiki.org)

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