7JTV Protein Binding date Aug 18, 2020
title Structure Of Impa From Pseudomonas Aeruginosa In Complex Wit Glycopeptide
authors I.Noach, A.B.Boraston
compound source
Molecule: Immunomodulating Metalloprotease
Chain: B, A
Synonym: Impa, O-Glycopeptidase
Ec: 3.4.24.-
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 208964
Strain: Atcc 15692 Dsm 22644 Cip 104116 Jcm 14847 L 1c Prs 101 Pao1;
Gene: Impa, Pa0572
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glu-Ala-Pro-Ser-Ala
Chain: E, H
Engineered: Yes
Other_details: Synthetic Peptide
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.340 156.500 95.680 90.00 114.31 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand A2G, EDO, GAL, ZN enzyme Hydrolase E.C.3.4.24 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (590 Kb) [Save to disk]
  • Biological Unit Coordinates (7jtv.pdb1.gz) 287 Kb
  • Biological Unit Coordinates (7jtv.pdb2.gz) 287 Kb
  • LPC: Ligand-Protein Contacts for 7JTV
  • CSU: Contacts of Structural Units for 7JTV
  • Structure Factors (3237 Kb)
  • Retrieve 7JTV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7JTV from S2C, [Save to disk]
    • View 7JTV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7JTV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7jtv_A] [7jtv_E] [7jtv_H] [7jtv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7JTV
  • Community annotation for 7JTV at PDBWiki (http://pdbwiki.org)

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