7KEW Viral Protein Immune System date Oct 13, 2020
title Bundibugyo Virus Gp (Mucin Deleted) Bound To Antibody Fab Bd
authors C.D.Murin, A.B.Ward
compound source
Molecule: Spike Glycoprotein 1
Chain: A, B, C
Engineered: Yes
Organism_scientific: Bundibugyo Ebolavirus
Organism_taxid: 565995
Gene: Gp
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293f

Molecule: Bdbv-43 Fab Heavy Chain
Chain: G, H, I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293f

Molecule: Bdbv-43 Fab Light Chain
Chain: J, K, L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293f

Molecule: Envelope Glycoprotein 2
Chain: D, E, F
Synonym: Spike Glycoprotein
Engineered: Yes

Organism_scientific: Bundibugyo Ebolavirus
Organism_taxid: 565995
Gene: Gp, Df49_53413gpgp, Dh33_45404gpgp
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_atcc_number: Hek 293f
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.16 Å
ligand BMA, MAN, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (7kew.pdb1.gz) 265 Kb
  • LPC: Ligand-Protein Contacts for 7KEW
  • CSU: Contacts of Structural Units for 7KEW
  • Retrieve 7KEW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7KEW from S2C, [Save to disk]
  • View 7KEW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7KEW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7kew_A] [7kew_D] [7kew_G] [7kew_H] [7kew_E] [7kew_I] [7kew_K] [7kew_L] [7kew_C] [7kew_F] [7kew_J] [7kew_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7KEW
  • Community annotation for 7KEW at PDBWiki (http://pdbwiki.org)

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