7KFB Viral Protein Immune System date Oct 13, 2020
title Ebola Virus Gp (Mucin Deleted, Makona Strain) Bound To Antib Ebov-442
authors C.D.Murin, A.B.Ward
compound source
Molecule: Virion Spike Glycoprotein 1
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Ebola Virus
Organism_taxid: 1570291
Gene: Gp
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293f

Molecule: Antibody Fab Ebov-442 Heavy Chain
Chain: G, H, I
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293f

Molecule: Antibody Fab Ebov-442 Light Chain
Chain: J, K, L
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293f

Molecule: Virion Spike Glycoprotein 2
Chain: D, E, F
Engineered: Yes
Organism_scientific: Ebola Virus
Organism_taxid: 1570291
Gene: Gp
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293f
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand BMA, MAN, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (7kfb.pdb1.gz) 271 Kb
  • LPC: Ligand-Protein Contacts for 7KFB
  • CSU: Contacts of Structural Units for 7KFB
  • Retrieve 7KFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7KFB from S2C, [Save to disk]
    • View 7KFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7KFB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7kfb_J] [7kfb_H] [7kfb_G] [7kfb_A] [7kfb_L] [7kfb_E] [7kfb_K] [7kfb_B] [7kfb_F] [7kfb_I] [7kfb_C] [7kfb_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7KFB
  • Community annotation for 7KFB at PDBWiki (http://pdbwiki.org)

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