7M55 Antiviral Protein, Immune System date Mar 22, 2021
title B6 Fab Fragment Bound To The Mers-Cov Spike Stem Helix Pepti
authors M.M.Sauer, Y.J.Park, D.Veesler, Seattle Structural Genomics Cen Infectious Disease (Ssgcid)
compound source
Molecule: Spike Glycoprotein Stem Helix Peptide
Chain: A
Fragment: Residues 1230-1244 Of The Spike Glycoprotein
Synonym: S Glycoprotein,E2,Peplomer Protein
Engineered: Yes
Synthetic: Yes
Organism_scientific: Middle East Respiratory Syndrome-Relat Coronavirus;
Organism_common: Mers-Cov
Organism_taxid: 1335626

Molecule: B6 Antigen Binding Fragment (Fab) Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: B6 Antigen Binding Fragment (Fab) Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.173 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.589 60.444 79.710 90.00 93.75 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (7m55.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 7M55
  • CSU: Contacts of Structural Units for 7M55
  • Structure Factors (3608 Kb)
  • Retrieve 7M55 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7M55 from S2C, [Save to disk]
  • View 7M55 in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 7M55
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 7m55 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7m55_A] [7m55_H] [7m55_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7M55
  • Community annotation for 7M55 at PDBWiki (http://pdbwiki.org)

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