7MEB Hydrolase Inhibitor date Apr 06, 2021
title Cdd-1 Beta-Lactamase In Imidazolempd 2 Minute Avibactam Com
authors C.A.Smith, S.B.Vakulenko
compound source
Molecule: Beta-Lactamase
Chain: A
Synonym: Cdd-1 Beta-Lactamase
Ec: 3.5.2.6
Engineered: Yes
Other_details: Double Lysine To Alanine Mutant Lys238ala An Lys244ala
 Organism_scientific: Clostridioides Difficile
Organism_common: Peptoclostridium Difficile
Organism_taxid: 1496
Gene: Blar1_1, E5f32_07085, E5f39_11445, Samea3374989_01677
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 3 2
R_factor 0.180 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.584 123.584 123.584 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CO2, KCX, MPD, NXL, SO4 enzyme Hydrolase E.C.3.5.2.6 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (7meb.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 7MEB
  • CSU: Contacts of Structural Units for 7MEB
  • Structure Factors (1268 Kb)
  • Retrieve 7MEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7MEB from S2C, [Save to disk]
    • View 7MEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7MEB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7meb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7MEB
  • Community annotation for 7MEB at PDBWiki (http://pdbwiki.org)

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