7OA5 Dna Binding Protein date Apr 19, 2021
title Ruva Complexed To A Holliday Junction.
authors S.M.Roe, L.H.Pearl
compound source
Molecule: Holliday Junction Atp-Dependent Dna Helicase Ruva
Chain: A, B, C, D, E, F, G, H
Ec: 3.6.4.12
Engineered: Yes
 Organism_scientific: Mycobacterium Leprae (Strain Tn)
Organism_taxid: 272631
Strain: Tn
Gene: Ruva, Ml0482, B1177_c2_188
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Apgptptpcpgpcpgpapgptptpcp 3');
Chain: I
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mycobacterium Leprae
Organism_taxid: 1769

Molecule: Dna (5'-D(Gpcpgpapapcptpcpgpcpgpapap
Chain: J
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mycobacterium Leprae
Organism_taxid: 1769

Molecule: Dna (5'-D(Apgptptpcpgpcpgpcpgpcpgpap 3');
Chain: K
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mycobacterium Leprae
Organism_taxid: 1769

Molecule: Dna (5'-D(Pgptptpcpgpcpgpcpgpcpgpapa 3');
Chain: L
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mycobacterium Leprae
Organism_taxid: 1769
symmetry Space Group: P 31
R_factor 0.227 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.350 141.350 106.470 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.38 Å
ligand CA enzyme Hydrolase E.C.3.6.4.12 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (7oa5.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 7OA5
  • CSU: Contacts of Structural Units for 7OA5
  • Structure Factors (5829 Kb)
  • Retrieve 7OA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7OA5 from S2C, [Save to disk]
    • View 7OA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7OA5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7oa5_E] [7oa5_F] [7oa5_D] [7oa5_L] [7oa5_G] [7oa5_K] [7oa5_H] [7oa5_J] [7oa5_I] [7oa5_A] [7oa5_C] [7oa5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7OA5
  • Community annotation for 7OA5 at PDBWiki (http://pdbwiki.org)

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