7OCX Rna Binding Protein date Apr 28, 2021
title Crystal Structure Of The Pid-3 Tofu-6 Rrm Domain Complex
authors J.Basquin, R.F.Ketting, S.Falk
compound source
Molecule: Protein Pid-3
Chain: A, B
Synonym: Pirna Biogenesis And Chromosome Segregation Protei Induced Silencing Defective Protein 3;
Engineered: Yes
Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Pid-3, Pics-1, Y23h5a.3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Embryonic Developmental Protein Tofu-6
Chain: C, D
Synonym: 21u-Rna Biogenesis Fouled Up Protein 6,Maternal Ef Lethal Protein 47;
Engineered: Yes

Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Tofu-6, Mel-47, Eeed8.1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.980 68.002 130.585 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (7ocx.pdb1.gz) 157 Kb
  • CSU: Contacts of Structural Units for 7OCX
  • Structure Factors (1072 Kb)
  • Retrieve 7OCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7OCX from S2C, [Save to disk]
  • View 7OCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7OCX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7ocx_A] [7ocx_B] [7ocx_C] [7ocx_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7OCX
  • Community annotation for 7OCX at PDBWiki (http://pdbwiki.org)

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