7S6N Transferase date Sep 14, 2021
title N-Acetylglucosamine-1-Phosphotransferase (Gnpt) Alpha And Be Subunits (Gnptab) Catalytic Domain, From Zebrafish
authors A.Gorelik, K.Illes, B.Nagar
compound source
Molecule: N-Acetylglucosamine-1-Phosphotransferase (Gnpt) A (Gnptab) Catalytic Domain,N-Acetylglucosamine-1-Phosphotran Subunit Beta;
Chain: A, B
Engineered: Yes
 Organism_scientific: Danio Rerio
Organism_common: Zebrafish, Brachydanio Rerio
Organism_taxid: 7955
Gene: Gnptab, Gnpta, Si:Ch211-234f20.3, Zgc:122985
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.182 86.605 106.985 90.00 112.17 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand BMA, CA, FUC, MAN, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk]
  • Biological Unit Coordinates (7s6n.pdb1.gz) 288 Kb
  • LPC: Ligand-Protein Contacts for 7S6N
  • CSU: Contacts of Structural Units for 7S6N
  • Structure Factors (358 Kb)
  • Retrieve 7S6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7S6N from S2C, [Save to disk]
    • View 7S6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7S6N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7s6n_B] [7s6n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7S6N
  • Community annotation for 7S6N at PDBWiki (http://pdbwiki.org)

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