7SEZ Viral Protein date Oct 02, 2021
title Crystal Structure Of Vaccinia Virus Decapping Enzyme D9 In C With M7gdp
authors J.K.Peters, R.W.Tibble, M.Warminski, J.Jemielity, J.D.Gross
compound source
Molecule: Dna Repair Ntp-Phosphohydrolase
Chain: A
Synonym: Mutt Motifmrna Decapping Enzyme,Ntp-Phosphohydrol Putative D9r;
Engineered: Yes
 Organism_scientific: Vaccinia Virus Western Reserve
Organism_taxid: 696871
Gene: D9r, Vacv_brz_serro2_112, Vacv_ctgv_aleh2_114, Vacv_ctgv_cg04_114, Vacv_ctgv_mi233-114, Vacv_ctgv_vi04_114 Vac_ihdw1_116, Vac_tkt3_104, Vac_tkt4_104, Vac_tp3_119, Vac Vacv_ctgv_cm01_114, Vacv_tt10_141, Vacv_tt11_141, Vacv_tt12 Vacv_tt8_141, Vacv_tt9_141;
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 2 2 21
R_factor 0.193 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.550 140.100 75.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 8NK, M7G, NA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (7sez.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 7SEZ
  • CSU: Contacts of Structural Units for 7SEZ
  • Structure Factors (1103 Kb)
  • Retrieve 7SEZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7SEZ from S2C, [Save to disk]
    • View 7SEZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7SEZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7sez_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7SEZ
  • Community annotation for 7SEZ at PDBWiki (http://pdbwiki.org)

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