8DAJ Biosynthetic Protein date Jun 13, 2022
title Structure And Biochemistry Of A Promiscuous Thermophilic Polyhydroxybutyrate Depolymerase From Lihuaxuella Thermophi
authors G.M.Thomas, S.Quirk, D.J.E.Huard, R.L.Lieberman
compound source
Molecule: Esterase, Phb Depolymerase Family
Chain: A
Synonym: Polyhydroxybutyrate Depolymerase
Engineered: Yes
Organism_scientific: Lihuaxuella Thermophila
Organism_taxid: 1173111
Gene: Samn05444955_11823
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.163 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.510 45.510 211.260 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.20 Å
ligand EDO, IPA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (8daj.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 8DAJ
  • CSU: Contacts of Structural Units for 8DAJ
  • Structure Factors (2408 Kb)
  • Retrieve 8DAJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8DAJ from S2C, [Save to disk]
  • View 8DAJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 8DAJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8daj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 8DAJ
  • Community annotation for 8DAJ at PDBWiki (http://pdbwiki.org)

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