9GAF	Hydrolase Hydrolase Inhibitor	date	Jun 15, 1999
title	Precursor Of The W11f Mutant Glycosylasparaginase From Flavo Meningosepticum
authors	H.C.Guo, Q.Xu
compound		source
Molecule: Protein (Glycosylasparaginase) Chain: A, C Synonym: Glycoasparaginase,Aspartylglycosylaminase, Aspartylglucosaminidase; Ec: 3.5.1.26 Engineered: Yes Mutation: Yes Other_details: An Inhibitor (Free Glycine) Is Bound To Each		Organism_scientific: Elizabethkingia Meningoseptica Organism_taxid: 238 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pmal Fusion Protein Other_details: Recombinant Protein
symmetry	Space Group: P 1	R_factor 0.196 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.300 52.800 62.400 80.80 90.50 105.10
method	X-Ray Diffraction	resolution	1.90 Å
ligand	GLY	enzyme	Hydrolase E.C.3.5.1.26 BRENDA
related structures	by homologous chain: 1P4V, 9GAC
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structural insights into the mechanism of intramolecular proteolysis., Xu Q, Buckley D, Guan C, Guo HC, Cell 1999 Sep 3;98(5):651-61. PMID:10490104

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk] Biological Unit Coordinates (9gaf.pdb1.gz) 91 Kb LPC: Ligand-Protein Contacts for 9GAF CSU: Contacts of Structural Units for 9GAF Likely Quarternary Molecular Structure file(s) for 9GAF Retrieve 9GAF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 9GAF from S2C, [Save to disk]

View 9GAF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 9GAF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 9GAF, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d9gafa_, region A [Jmol] [rasmolscript] [script source]     - Domain d9gafc_, region C [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [9gaf_A] [9gaf] [9gaf_C] SWISS-PROT database: [Q47898] Domain organization of [ASPG_ELIMR] by SWISSPFAM

Other resources with information on 9GAF

Community annotation for 9GAF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---