OCA Atlas for 5JPW

5JPW

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, B		intracellular transport of v... negative regulation of mitoc... microtubule-dependent intrac... transport of viral material ...

Primary reference

Molecular Basis for the Protein Recognition Specificity of the dynein light chain DYNLT1/Tctex1. Characterization of the Interaction with Activin Receptor IIB., Merino-Gracia J, Zamora-Carreras H, Bruix M, Rodriguez-Crespo I, J Biol Chem. 2016 Aug 8. pii: jbc.M116.736884. PMID:27502274

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1398 Kb) [Save to disk]

Biological Unit Coordinates (5jpw.pdb1.gz) 71 Kb

CSU: Contacts of Structural Units for 5JPW

Original NMR restraints for 5JPW from PDB

Retrieve 5JPW in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5JPW from S2C, [Save to disk]

View 5JPW in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JPW

Cartoon representation from PDB Cartoon

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Crystal Contacts, from CryCo at Weizmann Institute

Fold representative 5jpw from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jpw] [5jpw_A] [5jpw_B]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5JPW

Community annotation for 5JPW at PDBWiki (http://pdbwiki.org)

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