10GS HUMAN GLUTATHIONE S-TRANSFERASE P1-1, COMPLEX WITH TER117 date
authors Oakley, A., Parker, M.
compound source
symmetry
R_factor
R_Free 0.2140000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand MES, VWW enzyme
related structures by homologous chain: 2GLR, 7GSS
Gene GTP (H. sapiens)
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • glutathione peroxidase activ...
  • protein binding


    • Primary referenceThe structures of human glutathione transferase P1-1 in complex with glutathione and various inhibitors at high resolution., Oakley AJ, Lo Bello M, Battistoni A, Ricci G, Rossjohn J, Villar HO, Parker MW, J Mol Biol 1997 Nov 21;274(1):84-100. PMID:9398518
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (10gs.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 10GS
  • CSU: Contacts of Structural Units for 10GS
  • Likely Quarternary Molecular Structure file(s) for 10GS
  • Structure Factors (198 Kb)
  • Retrieve 10GS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 10GS from S2C, [Save to disk]
  • Re-refined 10gs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 10GS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 10GS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 10GS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d10gsa2, region A:2-76 [Jmol] [rasmolscript] [script source]
        - Domain d10gsa1, region A:77-209 [Jmol] [rasmolscript] [script source]
        - Domain d10gsb2, region B:2-76 [Jmol] [rasmolscript] [script source]
        - Domain d10gsb1, region B:77-209 [Jmol] [rasmolscript] [script source]
  • Fold representative 10gs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [10gs] [10gs_B] [10gs_A] [10gs_G] [10gs_H]
  • SWISS-PROT database: [P09211]
  • Domain organization of [GSTP1_HUMAN] by SWISSPFAM
    • Other resources with information on 10GS
  • Community annotation for 10GS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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