118L	Hydrolase(O-Glycosyl)	date	May 28, 1993
title	The Energetic Cost And The Structural Consequences Of Buryin Hydroxyl Group Within The Core Of A Protein Determined From Ser And Val To Thr Substitutions In T4 Lysozyme
authors	M.Blaber, B.W.Matthews
compound		source
Molecule: T4 Lysozyme Chain: A Ec: 3.2.1.17 Engineered: Yes		Organism_scientific: Enterobacteria Phage T4 Organism_taxid: 10665 Expression_system_vector_type: Plasmid Expression_system_plasmid: M13
symmetry	Space Group: P 32 2 1	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.800 60.800 97.000 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	BME, CL	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
related structures	by homologous chain: 163L, 1L93
Gene Ontology	Chain Function Process Component A
Primary reference	Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme., Blaber M, Lindstrom JD, Gassner N, Xu J, Heinz DW, Matthews BW, Biochemistry 1993 Oct 26;32(42):11363-73. PMID:8218201

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (118l.pdb1.gz) 31 Kb LPC: Ligand-Protein Contacts for 118L CSU: Contacts of Structural Units for 118L Likely Quarternary Molecular Structure file(s) for 118L Structure Factors (132 Kb) Retrieve 118L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 118L from S2C, [Save to disk] Re-refined 118l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 118L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 118L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 118L, from MSDmotif at EBI Genome occurence of 118L's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d118l__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [118l] [118l_A] SWISS-PROT database: [P00720] Domain organization of [LYS_BPT4] by SWISSPFAM

Other resources with information on 118L

Community annotation for 118L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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