133L Hydrolase(O-Glycosyl) date Jun 01, 1993
title Role Of Arg 115 In The Catalytic Action Of Human Lysozyme. X Structure Of His 115 And Glu 115 Mutants
authors K.Harata, M.Muraki, Y.Jigami
compound source
Molecule: Human Lysozyme
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_plasmid: M13
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
57.110 61.140 33.130 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.77 Å
enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1LAA, 1TBY

Primary referenceRole of Arg115 in the catalytic action of human lysozyme. X-ray structure of His115 and Glu115 mutants., Harata K, Muraki M, Jigami Y, J Mol Biol 1993 Oct 5;233(3):524-35. PMID:8105095
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (133l.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 133L
  • Likely Quarternary Molecular Structure file(s) for 133L
  • Structure Factors (99 Kb)
  • Retrieve 133L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 133L from S2C, [Save to disk]
  • Re-refined 133l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 133L in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 133L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 133L, from MSDmotif at EBI
  • Genome occurence of 133L's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d133l__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 133l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [133l_A] [133l]
  • SWISS-PROT database: [P61626]
  • Domain organization of [LYSC_HUMAN] by SWISSPFAM
  • Domain found in 133L: [LYZ1 ] by SMART
  • Other resources with information on 133L
  • Community annotation for 133L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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