188L Hydrolase (O-Glycosyl) date Apr 19, 1995
title Specificity Of Ligand Binding In A Buried Non-Polar Cavity O Lysozyme: Linkage Of Dynamics And Structural Plasticity
authors A.Morton, B.W.Matthews
compound source
Molecule: T4 Lysozyme
Chain: A
Ec: 3.2.1.17
Engineered: Yes
Organism_scientific: Enterobacteria Phage T4
Organism_taxid: 10665
Expression_system_vector_type: Plasmid
Expression_system_plasmid: M13
symmetry Space Group: P 32 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.800 60.800 96.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, HED, OXE BindingDB enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1L38, 212L
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSpecificity of ligand binding in a buried nonpolar cavity of T4 lysozyme: linkage of dynamics and structural plasticity., Morton A, Matthews BW, Biochemistry 1995 Jul 11;34(27):8576-88. PMID:7612599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (188l.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 188L
  • CSU: Contacts of Structural Units for 188L
  • Likely Quarternary Molecular Structure file(s) for 188L
  • Structure Factors (102 Kb)
  • Retrieve 188L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 188L from S2C, [Save to disk]
  • Re-refined 188l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 188L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 188L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 188L, from MSDmotif at EBI
  • Genome occurence of 188L's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d188l__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 188l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [188l] [188l_A]
  • SWISS-PROT database: [P00720]
  • Domain organization of [LYS_BPT4] by SWISSPFAM
  • Other resources with information on 188L
  • Community annotation for 188L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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