1A0N Complex (Phosphotransferase Peptide) date Dec 05, 1997
title Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3- Kinase, Family Of 25 Structures
authors D.A.Renzoni, D.J.R.Pugh, G.Siligardi, P.Das, C.J.Morton, C.Rossi, M.D.Waterfield, I.D.Campbell, J.E.Ladbury
compound source
Molecule: Pro-Pro-Arg-Pro-Leu-Pro-Val-Ala-Pro-Gly-Ser-Ser- Lys-Thr;
Chain: A
Fragment: P85 Subunit Of Pi3-Kinase, Residues 91 - 104
Synonym: P2l
Engineered: Yes


Molecule: Fyn
Chain: B
Fragment: Sh3 Domain, Residues 82 - 148
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1AZG
Primary referenceStructural and thermodynamic characterization of the interaction of the SH3 domain from Fyn with the proline-rich binding site on the p85 subunit of PI3-kinase., Renzoni DA, Pugh DJ, Siligardi G, Das P, Morton CJ, Rossi C, Waterfield MD, Campbell ID, Ladbury JE, Biochemistry 1996 Dec 10;35(49):15646-53. PMID:8961927
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (468 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1A0N
  • Retrieve 1A0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A0N from S2C, [Save to disk]
  • View 1A0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A0N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1A0N, from MSDmotif at EBI
  • Genome occurence of 1A0N's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a0nb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1a0n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a0n_A] [1a0n] [1a0n_B]
  • SWISS-PROT database: [P06241] [P27986]
  • Domain organization of [FYN_HUMAN] [P85A_HUMAN] by SWISSPFAM
  • Domain found in 1A0N: [SH3 ] by SMART
  • Alignments of the sequence of 1A0N with the sequences similar proteins can be viewed for 1A0N's classification [FYN_HUMAN] [P85A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FYN_HUMAN] [P85A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1A0N
  • Community annotation for 1A0N at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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