1A34 Virus Rna date Jan 28, 1998
title Satellite Tobacco Mosaic Virusrna Complex
authors S.B.Larson, J.Day, A.J.Greenwood, A.Mcpherson
compound source
Molecule: Protein (Satellite Tobacco Mosaic Virus)
Chain: A
Synonym: Stmv
Engineered: Yes
Organism_scientific: Satellite Tobacco Mosaic Virus
Organism_taxid: 12881
Expression_system: Nicotiana Tabacum
Expression_system_common: Common Tobacco
Expression_system_taxid: 4097

Molecule: Rna (5'-R(Papapapapapapapapapa)-3')
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: Rna (5'-R(Pupupupupupupupupupu)-3')
Chain: C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: I 2 2 2
R_factor 0.179 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.270 191.770 202.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.81 Å
ligand SO4, U enzyme
note 1A34 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefined structure of satellite tobacco mosaic virus at 1.8 A resolution., Larson SB, Day J, Greenwood A, McPherson A, J Mol Biol 1998 Mar 20;277(1):37-59. PMID:9514737
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1a34.pdb1.gz) 3879 Kb
  • LPC: Ligand-Protein Contacts for 1A34
  • CSU: Contacts of Structural Units for 1A34
  • Likely Quarternary Molecular Structure file(s) for 1A34
  • Structure Factors (1997 Kb)
  • Retrieve 1A34 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A34 from S2C, [Save to disk]
  • Re-refined 1a34 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A34 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A34
  • VIPERdb: visual, structural and computational analysis of 1A34
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1A34, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Genome occurence of 1A34's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a34a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1a34 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a34_A] [1a34] [1a34_C] [1a34_B]
  • SWISS-PROT database: [P17574]
  • Domain organization of [COAT_STMV] by SWISSPFAM
  • Other resources with information on 1A34
  • Community annotation for 1A34 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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