1A5R Targeting Protein date Feb 18, 1998
title Structure Determination Of The Small Ubiquitin-Related Modifier Sumo-1, Nmr, 10 Structures
authors P.Bayer, A.Arndt, S.Metzger, R.Mahajan, F.Melchior, R.Jaenicke, J.Becker
compound source
Molecule: Sumo-1
Chain: A
Synonym: Pic1, Gmp1, Ubl1, Sentrin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex2t
methodSolution NMR
related structures by homologous chain: 1TGZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure determination of the small ubiquitin-related modifier SUMO-1., Bayer P, Arndt A, Metzger S, Mahajan R, Melchior F, Jaenicke R, Becker J, J Mol Biol 1998 Jul 10;280(2):275-86. PMID:9654451
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1A5R
  • Retrieve 1A5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A5R from S2C, [Save to disk]
  • View 1A5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A5R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1A5R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a5r__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1a5r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a5r] [1a5r_A]
  • SWISS-PROT database: [P63165]
  • Domain organization of [SUMO1_HUMAN] by SWISSPFAM
  • Domain found in 1A5R: [UBQ ] by SMART
  • Other resources with information on 1A5R
  • Community annotation for 1A5R at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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