1A7R Immunoglobulin date Mar 16, 1998
title Fv Fragment Of Mouse Monoclonal Antibody D1.3 (Balbc, Igg1, K) Variant Chain L Glu81->Asp
authors C.Marks, K.Henrick, G.Winter
compound source
Molecule: Igg1-Kappa D1.3 Fv (Light Chain)
Chain: L
Fragment: Fv Fragment
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Variant: Chain L, E81d
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Igg1-Kappa D1.3 Fv (Heavy Chain)
Chain: H
Fragment: Fv Fragment
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Variant: Chain L, E81d
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.170 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.245 90.245 56.235 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
related structures by homologous chain: 1A7O, 1A7P, 1FNS
Gene
Ontology
ChainFunctionProcessComponent
H


L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1a7r.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1A7R
  • Likely Quarternary Molecular Structure file(s) for 1A7R
  • Structure Factors (119 Kb)
  • Retrieve 1A7R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A7R from S2C, [Save to disk]
  • Re-refined 1a7r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A7R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A7R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1A7R, from MSDmotif at EBI
  • Genome occurence of 1A7R's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a7rh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1a7rl_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1a7r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a7r] [1a7r_L] [1a7r_H]
  • SWISS-PROT database: [P01820] [P01635]
  • Domain organization of [HVM44_MOUSE] [KV5A3_MOUSE] by SWISSPFAM
  • Domain found in 1A7R: [IGv ] by SMART
  • Other resources with information on 1A7R
  • Community annotation for 1A7R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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