1A8E Iron Transport date Mar 24, 1998
title Human Serum Transferrin, Recombinant N-Terminal Lobe
authors R.T.A.Macgillivray, S.A.Moore, J.Chen, B.F.Anderson, H.Baker, Y.Luo, M.Bewley, C.A.Smith, M.E.P.Murphy, Y.Wang, A.B.Mason, R.C.Woodworth, G.D.Brayer, E.N.Baker
compound source
Molecule: Serum Transferrin
Chain: A
Fragment: N-Terminal Lobe
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Baby Hamster Kidney Cells
Organ: Kidney
Cellular_location: Extracellular
Expression_system: Cricetinae
Expression_system_common: Hamsters
Expression_system_taxid: 10026
Expression_system_vector: Pnut-Bhk
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.120 57.910 135.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CO3, FE enzyme
related structures by homologous chain: 1D3K, 1RYO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTwo high-resolution crystal structures of the recombinant N-lobe of human transferrin reveal a structural change implicated in iron release., MacGillivray RT, Moore SA, Chen J, Anderson BF, Baker H, Luo Y, Bewley M, Smith CA, Murphy ME, Wang Y, Mason AB, Woodworth RC, Brayer GD, Baker EN, Biochemistry 1998 Jun 2;37(22):7919-28. PMID:9609685
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1a8e.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 1A8E
  • CSU: Contacts of Structural Units for 1A8E
  • Likely Quarternary Molecular Structure file(s) for 1A8E
  • Structure Factors (294 Kb)
  • Retrieve 1A8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A8E from S2C, [Save to disk]
  • Re-refined 1a8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A8E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1A8E, from MSDmotif at EBI
  • Genome occurence of 1A8E's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a8e__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1a8e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a8e_A] [1a8e]
  • SWISS-PROT database: [P02787]
  • Domain organization of [TRFE_HUMAN] by SWISSPFAM
  • Domain found in 1A8E: [TR_FER ] by SMART
  • Other resources with information on 1A8E
  • Community annotation for 1A8E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1A8E from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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