1AA1 Oxidoreductase date Jan 20, 1997
title Activated Spinach Rubisco In Complex With The Product 3- Phosphoglycerate
authors T.C.Taylor, I.Andersson
compound source
Molecule: Ribulose Bisphosphate Carboxylase (Large Chain)
Chain: L, B, E, H
Synonym: Rubisco
Ec: 4.1.1.39
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562
Organ: Leaf

Molecule: Ribulose Bisphosphate Carboxylase (Small Chain)
Chain: S, C, F, I
Synonym: Rubisco
Ec: 4.1.1.39

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562
Organ: Leaf
symmetry Space Group: C 2 2 21
R_factor 0.207 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.600 158.700 203.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 3PG, KCX, MG enzyme Lyase E.C.4.1.1.39 BRENDA
related structures by homologous chain: 1AUS, 1RXO
Gene
Ontology
ChainFunctionProcessComponent
H, L, E, B


Primary referenceStructure of a product complex of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase., Taylor TC, Andersson I, Biochemistry 1997 Apr 1;36(13):4041-6. PMID:9092835
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (386 Kb) [Save to disk]
  • Biological Unit Coordinates (1aa1.pdb1.gz) 754 Kb
  • LPC: Ligand-Protein Contacts for 1AA1
  • CSU: Contacts of Structural Units for 1AA1
  • Likely Quarternary Molecular Structure file(s) for 1AA1
  • Structure Factors (961 Kb)
  • Retrieve 1AA1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AA1 from S2C, [Save to disk]
  • Re-refined 1aa1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AA1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AA1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AA1, from MSDmotif at EBI
  • Genome occurence of 1AA1's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i1aa1, region A:179-269 [Jmol] [rasmolscript] [script source]
        - Domain d1c1aa1, region A:217-272 [Jmol] [rasmolscript] [script source]
        - Domain d1d1aa1, region A:34-79 [Jmol] [rasmolscript] [script source]
        - Domain d1aa1b1, region B:148-463 [Jmol] [rasmolscript] [script source]
        - Domain d1aa1b2, region B:21-147 [Jmol] [rasmolscript] [script source]
        - Domain d1aa1c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1aa1e1, region E:148-463 [Jmol] [rasmolscript] [script source]
        - Domain d1aa1e2, region E:21-147 [Jmol] [rasmolscript] [script source]
        - Domain d1aa1f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1aa1h1, region H:148-463 [Jmol] [rasmolscript] [script source]
        - Domain d1aa1h2, region H:21-147 [Jmol] [rasmolscript] [script source]
        - Domain d1aa1i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1aa1l1, region L:148-463 [Jmol] [rasmolscript] [script source]
        - Domain d1aa1l2, region L:21-147 [Jmol] [rasmolscript] [script source]
        - Domain d1aa1s_, region S [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aa1_B] [1aa1_F] [1aa1_L] [1aa1_H] [1aa1_C] [1aa1_S] [1aa1] [1aa1_E] [1aa1_I]
  • SWISS-PROT database: [P00875] [Q43832]
  • Domain organization of [RBL_SPIOL] [RBS2_SPIOL] by SWISSPFAM
  • Domain found in 1AA1: [RuBisCO_small ] by SMART
  • Other resources with information on 1AA1
  • Community annotation for 1AA1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science