1AB3 Ribosomal Protein date Feb 03, 1997
title Ribosomal Protein S15 From Thermus Thermophilus, Nmr, 26 Str
authors H.Berglund, A.Rak, A.Serganov, M.Garber, T.Hard
compound source
Molecule: Ribosomal Rna Binding Protein S15
Chain: A
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Cell_line: Bl21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet11c
methodSolution NMR
related structures by homologous chain: 1N32
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the ribosomal RNA binding protein S15 from Thermus thermophilus., Berglund H, Rak A, Serganov A, Garber M, Hard T, Nat Struct Biol 1997 Jan;4(1):20-3. PMID:8989316
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (660 Kb) [Save to disk]
  • Biological Unit Coordinates (1ab3.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1AB3
  • Original NMR restraints for 1AB3 from PDB
  • Retrieve 1AB3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AB3 from S2C, [Save to disk]
    • View 1AB3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AB3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AB3, from MSDmotif at EBI
  • Genome occurence of 1AB3's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ab3__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ab3] [1ab3_A]
  • SWISS-PROT database: [P80378]
  • Domain organization of [RS15_THETH] by SWISSPFAM
  • Domain found in 1AB3: [Ribosomal_S15 ] by SMART
    • Other resources with information on 1AB3
  • Community annotation for 1AB3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1AB3 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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