1ADZ Hydrolase date Feb 19, 1997
title The Solution Structure Of The Second Kunitz Domain Of Tissue Pathway Inhibitor, Nmr, 30 Structures
authors M.J.M.Burgering, L.P.M.Orbons
compound source
Molecule: Tissue Factor Pathway Inhibitor
Chain: A
Fragment: Factor Xa-Binding Domain (Domain II)
Synonym: Tfpi, Epi, Laci
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Je5505
Expression_system_plasmid: Pflag
methodSolution NMR
related structures by homologous chain: 1TFX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe second Kunitz domain of human tissue factor pathway inhibitor: cloning, structure determination and interaction with factor Xa., Burgering MJ, Orbons LP, van der Doelen A, Mulders J, Theunissen HJ, Grootenhuis PD, Bode W, Huber R, Stubbs MT, J Mol Biol 1997 Jun 13;269(3):395-407. PMID:9199408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (563 Kb) [Save to disk]
  • Biological Unit Coordinates (1adz.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1ADZ
  • Original NMR restraints for 1ADZ from PDB
  • Retrieve 1ADZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ADZ from S2C, [Save to disk]
    • View 1ADZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ADZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ADZ, from MSDmotif at EBI
  • Genome occurence of 1ADZ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1adz__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1adz] [1adz_A]
  • SWISS-PROT database: [P10646]
  • Domain organization of [TFPI1_HUMAN] by SWISSPFAM
  • Domain found in 1ADZ: [KU ] by SMART
    • Other resources with information on 1ADZ
  • Community annotation for 1ADZ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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