1AGE Histocompatibility Complex date Mar 24, 1997
title Antagonist Hiv-1 Gag Peptides Induce Structural Changes In Hla B8-Hiv-1 Gag Peptide (Ggkkkyrl-7r Mutation)
authors S.W.Reid, S.Mcadam, K.J.Smith, P.Klenerman, C.A.O'Callaghan, K.Harlos, B.K.Jakobsen, A.J.Mcmichael, J.Bell, D.I.Stuart, E.Y.Jones
compound source
Molecule: B0801
Chain: A
Fragment: Extracellular
Synonym: B8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Xa90
Gene: Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21(De3)Plyss
Expression_system_plasmid: Pgmt7
Expression_system_gene: Gag

Molecule: Beta-2 Microglobulin
Chain: B
Fragment: Extracellular
Synonym: B2m
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Xa90
Gene: Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Xa90
Expression_system_plasmid: Phn1
Expression_system_gene: Gag

Molecule: Hiv-1 Gag Peptide (Ggkkkyrl - 7r Mutation)
Chain: C
Fragment: Extracellular
Synonym: Peptide
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.700 81.200 110.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 1XR8, 2VAA
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceAntagonist HIV-1 Gag peptides induce structural changes in HLA B8., Reid SW, McAdam S, Smith KJ, Klenerman P, O'Callaghan CA, Harlos K, Jakobsen BK, McMichael AJ, Bell JI, Stuart DI, Jones EY, J Exp Med 1996 Dec 1;184(6):2279-86. PMID:8976183
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1age.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 1AGE
  • Likely Quarternary Molecular Structure file(s) for 1AGE
  • Retrieve 1AGE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AGE from S2C, [Save to disk]
  • View 1AGE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AGE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AGE, from MSDmotif at EBI
  • Genome occurence of 1AGE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1agea2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1agea1, region A:182-276 [Jmol] [rasmolscript] [script source]
        - Domain d1ageb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1age from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1age_B] [1age_C] [1age] [1age_A]
  • SWISS-PROT database: [P30460] [P61769]
  • Domain organization of [1B08_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 1AGE: [IGc1 ] by SMART
  • Other resources with information on 1AGE
  • Community annotation for 1AGE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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