1AKP SEQUENTIAL 1H,13C AND 15N NMR ASSIGNMENTS AND SOLUTION CONFORMATION OF APOKEDARCIDIN date
authors Constantine, K.L., Colson, K.L., Wittekind, M., Friedrichs, M.S., Zein, N., Tuttle, J., Langley, D.R., Leet, J.E., Schroeder, D.R., Lam, K.S., II, B.T.Farmer., Metzler, W.J., Bruccoleri, R.E., Mueller, L.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 15 Modelsresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSequential 1H, 13C, and 15N NMR assignments and solution conformation of apokedarcidin., Constantine KL, Colson KL, Wittekind M, Friedrichs MS, Zein N, Tuttle J, Langley DR, Leet JE, Schroeder DR, Lam KS, et al., Biochemistry 1994 Sep 27;33(38):11438-52. PMID:7918358
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (376 Kb) [Save to disk]
  • Biological Unit Coordinates (1akp.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1AKP
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1AKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AKP from S2C, [Save to disk]
    • View 1AKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AKP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AKP, from MSDmotif at EBI
  • Genome occurence of 1AKP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1akp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1akp] [1akp_A]
  • SWISS-PROT database: [P41249]
  • Domain organization of [KEDA_ACTSL] by SWISSPFAM
    • Other resources with information on 1AKP
  • Community annotation for 1AKP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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