1AKY Transferase (Phosphotransferase) date Jul 28, 1995
title High-Resolution Structures Of Adenylate Kinase From Yeast Li Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer
authors U.Abele, G.E.Schulz
compound source
Molecule: Adenylate Kinase
Chain: A
Synonym: Atp\:Amp Phosphotransferase, Myokinase
Ec: 2.7.4.3
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Fala Strasbourg
Cellular_location: Cytosol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.194 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.300 40.500 45.700 110.80 109.00 63.30
method X-Ray Diffractionresolution 1.63 Å
ligand AP5, IMD enzyme Transferase E.C.2.7.4.3 BRENDA
related structures by homologous chain: 2AKY
Gene
Ontology
ChainFunctionProcessComponent
A
  • adenylate kinase activity


  • Primary referenceHigh-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer., Abele U, Schulz GE, Protein Sci 1995 Jul;4(7):1262-71. PMID:7670369
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1aky.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1AKY
  • CSU: Contacts of Structural Units for 1AKY
  • Likely Quarternary Molecular Structure file(s) for 1AKY
  • Structure Factors (155 Kb)
  • Retrieve 1AKY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AKY from S2C, [Save to disk]
  • Re-refined 1aky structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AKY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AKY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AKY, from MSDmotif at EBI
  • Genome occurence of 1AKY's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1aky_2, region 131-168 [Jmol] [rasmolscript] [script source]
        - Domain d1aky_1, region 3-130,169-220 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aky_A] [1aky]
  • SWISS-PROT database: [P07170]
  • Domain organization of [KAD1_YEAST] by SWISSPFAM
  • Other resources with information on 1AKY
  • Community annotation for 1AKY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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