1ALZ Antibiotic date Jun 06, 1997
title Gramicidin D From Bacillus Brevis (Ethanol Solvate)
authors B.M.Burkhart, W.A.Pangborn, W.L.Duax, D.A.Langs
compound source
Molecule: Ile-Gramicidin C
Chain: A
 Organism_scientific: Brevibacillus Brevis
Organism_taxid: 1393

Molecule: Val-Gramicidin A
Chain: B
Organism_scientific: Brevibacillus Brevis
Organism_taxid: 1393
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.595 32.369 24.219 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.86 Å
ligand DLE, DVA, EOH, ETA, FVA, QIL enzyme
note 1ALZ supersedes 1GMA
Primary referenceHeterodimer formation and crystal nucleation of gramicidin D., Burkhart BM, Gassman RM, Langs DA, Pangborn WA, Duax WL, Biophys J 1998 Nov;75(5):2135-46. PMID:9788907
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1alz.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1ALZ
  • CSU: Contacts of Structural Units for 1ALZ
  • Likely Quarternary Molecular Structure file(s) for 1ALZ
  • Structure Factors (182 Kb)
  • Retrieve 1ALZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ALZ from S2C, [Save to disk]
    • View 1ALZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ALZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1ALZ 1ALZA 1ALZB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ALZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1alza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1alzb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1alz_A] [1alz] [1alz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1ALZ
  • Community annotation for 1ALZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science