1APM Transferase(Phosphotransferase) date Jan 18, 1993
title 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subu Camp-Dependent Protein Kinase Complexed With A Peptide Inhi Detergent
authors D.R.Knighton, S.M.Bell, J.Zheng, L.F.Teneyck, N.H.Xuong, S.S.Tay J.M.Sowadski
compound source
Molecule: Camp-Dependent Protein Kinase
Chain: E
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Peptide Inhibitor Pki(5-24)
Chain: I
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.840 75.760 81.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand OCT, SEP, TPO enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1CDK, 1Q8T
Gene
Ontology
ChainFunctionProcessComponent
E
  • cellular response to glucose...

  • I


    Primary reference2.0 A refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with a peptide inhibitor and detergent., Knighton DR, Bell SM, Zheng J, Ten Eyck LF, Xuong NH, Taylor SS, Sowadski JM, Acta Crystallogr D Biol Crystallogr. 1993 May 1;49(Pt 3):357-61. PMID:15299526
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1apm.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 1APM
  • CSU: Contacts of Structural Units for 1APM
  • Likely Quarternary Molecular Structure file(s) for 1APM
  • Structure Factors (228 Kb)
  • Retrieve 1APM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1APM from S2C, [Save to disk]
  • Re-refined 1apm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1APM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1APM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1APM, from MSDmotif at EBI
  • Genome occurence of 1APM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1apme_, region E [Jmol] [rasmolscript] [script source]
  • Fold representative 1apm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1apm_I] [1apm] [1apm_E]
  • SWISS-PROT database: [P63248] [P05132]
  • Domain organization of [IPKA_MOUSE] [KAPCA_MOUSE] by SWISSPFAM
  • Domains found in 1APM: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 1APM
  • Community annotation for 1APM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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