1APO Coagulation Factor date Apr 21, 1992
title Three-Dimensional Structure Of The Apo Form Of The N-Termina Module Of Blood Coagulation Factor X As Determined By Nmr Spectroscopy And Simulated Folding
authors M.Ullner, M.Selander, E.Persson, J.Stenflo, T.Drakenberg, O.Telem
compound source
Molecule: Egf-Like Module Of Blood Coagulation Factor X
Chain: A
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
methodSolution NMR
ligand OH enzyme
related structures by homologous chain: 1CCF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure of the apo form of the N-terminal EGF-like module of blood coagulation factor X as determined by NMR spectroscopy and simulated folding., Ullner M, Selander M, Persson E, Stenflo J, Drakenberg T, Teleman O, Biochemistry 1992 Jul 7;31(26):5974-83. PMID:1627540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (1apo.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 1APO
  • CSU: Contacts of Structural Units for 1APO
  • Retrieve 1APO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1APO from S2C, [Save to disk]
    • View 1APO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1APO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1APO, from MSDmotif at EBI
  • Genome occurence of 1APO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1apo__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1apo] [1apo_A]
  • SWISS-PROT database: [P00743]
  • Domain organization of [FA10_BOVIN] by SWISSPFAM
  • Domain found in 1APO: [EGF_CA ] by SMART
    • Other resources with information on 1APO
  • Community annotation for 1APO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1APO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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