1ARK Transferase date Aug 07, 1997
title Sh3 Domain From Human Nebulin, Nmr, 15 Structures
authors A.S.Politou, A.Pastore
compound source
Molecule: Nebulin
Chain: A
Fragment: Sh3 Domain, Residues 6610 - 6669
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21 (De3) Plyss
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_cell_line: Bl21 (De3) Plyss
Expression_system_vector: Pet
Expression_system_plasmid: Bl21
methodSolution NMR
related structures by homologous chain: 1NEB
Primary referenceSH3 in muscles: solution structure of the SH3 domain from nebulin., Politou AS, Millevoi S, Gautel M, Kolmerer B, Pastore A, J Mol Biol 1998 Feb 13;276(1):189-202. PMID:9514727
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1ARK
  • Retrieve 1ARK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ARK from S2C, [Save to disk]
    • View 1ARK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ARK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ARK, from MSDmotif at EBI
  • Genome occurence of 1ARK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ark__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1ark from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ark_A] [1ark]
  • SWISS-PROT database: [P20929]
  • Domain organization of [NEBU_HUMAN] by SWISSPFAM
  • Domain found in 1ARK: [SH3 ] by SMART
    • Other resources with information on 1ARK
  • Community annotation for 1ARK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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