1AV1 Lipid Transport date Sep 23, 1997
title Crystal Structure Of Human Apolipoprotein A-I
authors D.W.Borhani, D.P.Rogers, J.A.Engler, C.G.Brouillette
compound source
Molecule: Apolipoprotein A-I
Chain: A, B, C, D
Fragment: Lipid-Binding Domain
Synonym: Apo A-I
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Tissue: Blood
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgemex
Expression_system_plasmid: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.382 R_Free 0.428
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.470 113.870 196.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of truncated human apolipoprotein A-I suggests a lipid-bound conformation., Borhani DW, Rogers DP, Engler JA, Brouillette CG, Proc Natl Acad Sci U S A 1997 Nov 11;94(23):12291-6. PMID:9356442
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (1av1.pdb1.gz) 114 Kb
  • CSU: Contacts of Structural Units for 1AV1
  • Likely Quarternary Molecular Structure file(s) for 1AV1
  • Structure Factors (201 Kb)
  • Retrieve 1AV1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AV1 from S2C, [Save to disk]
  • Re-refined 1av1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AV1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AV1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AV1, from MSDmotif at EBI
  • Genome occurence of 1AV1's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1av1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1av1b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1av1c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1av1d_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1av1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1av1_D] [1av1] [1av1_B] [1av1_A] [1av1_C]
  • SWISS-PROT database: [P02647]
  • Domain organization of [APOA1_HUMAN] by SWISSPFAM
  • Other resources with information on 1AV1
  • Community annotation for 1AV1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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