1AV6 Transferase Rna date Sep 26, 1997
title Vaccinia Methyltransferase Vp39 Complexed With M7g Capped Rn And S-Adenosylhomocysteine
authors A.E.Hodel, P.D.Gershon, F.A.Quiocho
compound source
Molecule: Rna (5'-R(Gpapapapapa)-3')
Chain: B
Synonym: 5' Capped Rna Hexamer
Engineered: Yes


Molecule: Cap-Specific Mrna (Nucleoside-2'-O-)-Methyltransf
Chain: A
Synonym: Poly(A) Polymerase Regulatory Subunit, Poly(A) Pol Small Subunit, Pap-S, Vp39;
Ec: 2.1.1.57
Engineered: Yes
Mutation: Yes
Organism_scientific: Vaccinia Virus Wr
Organism_common: Vacv
Organism_taxid: 10254
Strain: Western Reserve
Gene: Paps, Vacwr095, F9
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.800 64.600 99.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MGT, SAH enzyme Transferase E.C.2.1.1.57 BRENDA
related structures by homologous chain: 1JTF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for sequence-nonspecific recognition of 5'-capped mRNA by a cap-modifying enzyme., Hodel AE, Gershon PD, Quiocho FA, Mol Cell 1998 Feb;1(3):443-7. PMID:9660928
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1av6.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 1AV6
  • CSU: Contacts of Structural Units for 1AV6
  • Likely Quarternary Molecular Structure file(s) for 1AV6
  • Structure Factors (63 Kb)
  • Retrieve 1AV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AV6 from S2C, [Save to disk]
  • Re-refined 1av6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AV6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AV6, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Genome occurence of 1AV6's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1av6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1av6_B] [1av6_A] [1av6]
  • SWISS-PROT database: [P07617]
  • Domain organization of [PAP2_VACCW] by SWISSPFAM
  • Other resources with information on 1AV6
  • Community annotation for 1AV6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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