1AVR Calcium Phospholipid Binding date Oct 17, 1991
title Crystal And Molecular Structure Of Human Annexin V After Refinement. Implications For Structure, Membrane Binding And Ion Channel Formation Of The Annexin Family Of Proteins
authors R.Huber, R.Berendes, A.Burger, M.Schneider, A.Karshikov, H.Luecke, J.Roemisch, E.Paques
compound source
Molecule: Annexin V
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: H 3
R_factor 0.184 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.700 99.700 96.350 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, SO4 enzyme
related structures by homologous chain: 1AVH, 1HVE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal and molecular structure of human annexin V after refinement. Implications for structure, membrane binding and ion channel formation of the annexin family of proteins., Huber R, Berendes R, Burger A, Schneider M, Karshikov A, Luecke H, Romisch J, Paques E, J Mol Biol 1992 Feb 5;223(3):683-704. PMID:1311770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1avr.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 1AVR
  • CSU: Contacts of Structural Units for 1AVR
  • Likely Quarternary Molecular Structure file(s) for 1AVR
  • Retrieve 1AVR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AVR from S2C, [Save to disk]
  • View 1AVR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AVR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AVR, from MSDmotif at EBI
  • Genome occurence of 1AVR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1avr__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1avr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1avr] [1avr_A]
  • SWISS-PROT database: [P08758]
  • Domain organization of [ANXA5_HUMAN] by SWISSPFAM
  • Domain found in 1AVR: [ANX ] by SMART
  • Other resources with information on 1AVR
  • Community annotation for 1AVR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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